PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 463aa    MW: 51094.2 Da    PI: 5.9009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-07365407754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ rrRR++i +++  L++l+P         ++ a++L +A +Y+k L
  Sopen06g021950.1 365 AAARRRREKISERIRILQKLVPGG-----SNMDTASMLDEAANYLKFL 407
                       567*******************95.....48***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.38358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-13363417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-12364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-11364415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.41E-10364411No hitNo description
PfamPF000101.5E-4366407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMELKLEQSP PSTTGQFCYI SAASSSLIQI LYTFSSLVLY NSYRFGPFSC KANPLISIQQ  60
QVEIGESSAS SAMNFQEFGA AFDPIDILSS WNISQRQEAA TRLAADSVAA KSGAGSIGDC  120
SKRKIDSSSS NFPPGNNYLP YFGNNQVPVC SLMADLSSIS LFSKTKSPDC LLSATNTSNT  180
DTSGELDDVI FSEDSESLWN IHTSNVVSSG ESAIDAYKSK PIDANDNNDI HYSVNELHAT  240
VSSNNLIRSS EAKHYNMDKR SHDALLESDS SNRDYVIQLI SENDQPKSKK SRSEYKLPSS  300
SNINFQQASS LACSIVDRDS EAIAQMKEMI YRAAAFRPVS SVTEDVMAEK PKRKNVRISM  360
DPQTAAARRR REKISERIRI LQKLVPGGSN MDTASMLDEA ANYLKFLRTQ VNALESFGFN  420
IDPIIINNNF TTSLSSIPLI NYPFPLQPHF PMQNLNPIHH PKC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351370KRKNVRISMDPQTAAARRRR
2367372RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077486.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLK4C6X70.0K4C6X7_SOLLC; Uncharacterized protein
STRINGSolyc06g062460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-53bHLH family protein